SubtiBank SubtiBank
yrkI [2019-01-02 14:36:18]
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yrkI [2019-01-02 14:36:18]

unknown
locus
BSU26500
pI
6.08
mw
8.10 kDa
protein length
75 aa Sequence Blast
gene length
225 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    2,710,848 → 2,711,075

    The protein

    Protein family

  • sulfur carrier protein TusA family (according to Swiss-Prot) (with [protein|5FC3DF596816AA4E8541B324EC6DE6D89C90C8E2|YrkF])

    • Structure

  • [PDB|1PAV] (from Thermoplasma acidophilum, 32% identity) [pubmed|14739641]

    • Expression and Regulation

    Operons

    genes
    [gene|6AD1DD074B2F044C6A4E4B98FABC4E7FD67B3139|yrzM]-[gene|8A3F1BFDF85DD96B7FB4EBC807F71639AF69DE98|yrkD]-[gene|1F1FE531622CD218EE8990CDAC6D2D2F9E86FE3F|yrkE]-[gene|5FC3DF596816AA4E8541B324EC6DE6D89C90C8E2|yrkF]-[gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]-[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]-[gene|F3E842844B315FE438F66995CDFB8BA1C32BDF23|yrkJ]-[gene|1BEBD09273240B6B50DABCB160FCCBC205BB2AAE|yrkK]-[gene|search|yrkM]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|6AD1DD074B2F044C6A4E4B98FABC4E7FD67B3139|yrzM]-[gene|8A3F1BFDF85DD96B7FB4EBC807F71639AF69DE98|yrkD]-[gene|1F1FE531622CD218EE8990CDAC6D2D2F9E86FE3F|yrkE]-[gene|5FC3DF596816AA4E8541B324EC6DE6D89C90C8E2|yrkF]-[gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]-[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C508 (yrkI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2506 NBRP B. subtilis, Japan]
  • BKE26500 (Δ[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTTCTCTCCTCTTT, downstream forward: _UP4_TAATGAATGTGAAAGGGTAT
  • BKK26500 (Δ[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTTCTCTCCTCTTT, downstream forward: _UP4_TAATGAATGTGAAAGGGTAT

    • References

    Research papers

  • 14739641